Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRC | rs17037148 | chr4:107883068 | C/T | 4.15E-11 | 508 | 37.73 | 30.9 | 5.53 | KM Plot |
| KIRC | rs170379 | chr19:37694795 | G/T | 7.86E-5 | 502 | 41 | 29.9 | 20 | KM Plot |
| KIRC | rs17053804 | chr4:169141537 | C/T | 1.92E-8 | 503 | 37.47 | 33.67 | 3.1 | KM Plot |
| KIRC | rs17054974 | chr9:92164286 | A/G | 3.37E-5 | 509 | 36.97 | 47.73 | 10.62 | KM Plot |
| KIRC | rs17072833 | chr13:49914393 | C/T | 2.25E-6 | 509 | 36.95 | 39.85 | 3.67 | KM Plot |
| KIRC | rs17073310 | chr6:112406064 | C/T | 0.000138 | 509 | 36.4 | 46.17 | 27.8 | KM Plot |
| KIRC | rs17080869 | chr9:92166513 | A/G | 1.4E-5 | 506 | 36.88 | 48.78 | 10.62 | KM Plot |
| KIRC | rs1708304 | chr3:124361003 | C/T | 4.89E-5 | 504 | 37.03 | 40.05 | 16.92 | KM Plot |
| KIRC | rs1708305 | chr3:124361426 | C/T | 4.9E-5 | 496 | 37.03 | 40.05 | 18.7 | KM Plot |
| KIRC | rs1708307 | chr3:124361853 | A/G | 4.83E-5 | 497 | 37.18 | 40.05 | 18.7 | KM Plot |
| KIRC | rs1708308 | chr3:124362349 | C/G | 4.83E-5 | 497 | 37.18 | 40.05 | 18.7 | KM Plot |
| KIRC | rs1708309 | chr3:124364345 | G/T | 4.83E-5 | 497 | 37.18 | 40.05 | 18.7 | KM Plot |
| KIRC | rs1708310 | chr3:124365185 | T/C | 4.78E-5 | 498 | 37.03 | 40.05 | 18.7 | KM Plot |
| KIRC | rs1708311 | chr3:124365259 | A/T | 4.78E-5 | 498 | 37.03 | 40.05 | 18.7 | KM Plot |
| KIRC | rs1708312 | chr3:124365804 | G/A | 5.96E-5 | 499 | 37.03 | 40 | 18.7 | KM Plot |